Manual Practical Aspects of Trapped Ion Mass Spectrometry, Volume IV: Theory and Instrumentation: 4

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It also has a chapter detailing the toroidal and halo ion traps.

Real world applications of mass spectrometry

Other areas of ion mobility and the use of traveling wave technology for ion mobility and trapping ions are well covered. One feature of these publications is cross referencing. For many years, R. Graham Cooks and his research group have done research on variations of the quadrupole ion trap. In his chapter in Volume IV, he includes a figure entitled in part Geometric evolution of ion traps for use in miniature and multiplexed mass spectrometer… taken from an article published in Ann.

This figure shows the 3D-quadrupole ion trap with its hyperbolic electrodes evolving into the 3D-cylindrical ion trap CIT , the so-called 2D-linear ion trap LIT , which evolved into the rectilinear ion trap RIT ; and the toroidal trap, which evolved into the halo trap. Although, maybe not quite as spectacular as the mass instability scan, the triple resonance scan function developed by Varian is another significant contribution to the 3D QIT and may even be important to the radial scan mode of the LIT.

It will be interesting to see what Agilent does with this technology now that they own it. The only thing that appears to be missing is a discussion of the new technology from Thermo Fisher involving the dual pressure linear ion trap. Sometimes it appears that the lines between Instrumentation and Applications become blurred.

Some articles that may have been better suited for the Instrumentation volume appear in the Applications volume and vice versa. This is just one of the reasons that both volumes should be purchased as a set. These topic confusions may well be the explanation behind the fact that Volume V was introduced in late and Volume IV came out about 6 months later in ; both volumes have copyright dates of The role of ion traps and especially quadrupole ion traps as tandem-in-space instrument is well known.

This chapter gives detailed information about the role of a 3D QIT as a component in a tandem-inspace instrument. Very weak complex lipid species could also be included in this list. Figure 3 shows lipid class separation by DMS in the total brain extract, where peak centers of COV scan profile in each lipid species are plotted. Lipid classes were separated roughly by DMS as previously reported in GPLs 25 , but other lipid classes are also included. MS and DMS separation of brain total lipids protonated precursors using the ammonium acetate solvent A and sodiated precursors using the sodium acetate solvent B.

Practical Aspects of Trapped Ion Mass Spectrometry, Volume IV: Theory and Instrumentation

This type of display was introduced in our previous publication on TG characterization Besides aligning the acyl chains with the various lipid classes, the color codes on each data point reveal the specific intensities and therefore distribution profiles of specific sn -1 and sn -2 chains. In the cases of PCs Fig.

In contrast, the sn -2 position of PCs displayed more variety of chains, including long chains. Interestingly, long chains were not present in the sn -2 position of PCs when the sn -1 position was occupied by olein. In the cases of PEs Fig. For SLs Fig. The distribution of amide chain lengths was shifted to the lighter side than glycerophospholipids, i. Cers and SMs had similar acyl chain profiles Fig. Phytoceramides were not observed in our sample at this time, although it should be contained in the brain SL profiles of brains. In the case of TGs Fig. At the sn -2 position, palmitin P and olein O acyl groups were dominantly observed.

The outer sn -1 and sn -3 have a little more variations, including linolein L , than sn In 3D profile Fig. Interestingly, only one L at outside was allowed in brain TGs. Such two-dimensional plots in GPLs and SLs and 3D plots in TGs should be useful to display abnormal lipid profile in diseases as well as investigation of adulteration in edible oils, which were demonstrated previously TG profile of brains.

A: Inner sn -2 vs. B: sn -1 vs. C: sn -1 vs. Overall, this demonstration suggested experimental tips for selection of the working solvents. Ammonium acetate should be the first choice when PCs, PEs, and SMs are mainly targeting because intense protonated precursors are produced, head group neutral losses are avoided, and DMS separates them well. For analysis of neutral and acidic lipids, sodium acetate should be selected because ammonium acetate does not produce positively charged precursor ions.

Because the same method using the same instrument detected many species in PI liver , PA egg , and PG egg extracts, our method was verified for detecting such acidic GPLs. These results suggested that separated samples in each class are more sensitive than crude samples as expected.

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Liquid chromatography may be also useful to reduce the complexity of molecular species in ionization as well as the concentration of low abundant lipid species by column. Iodinated SMs were not observed in the brain total extract, which was reported in our previous publication Ionization efficiency for the weak lipid species may not be good in bulk ionization of crude samples.

In addition, another limitation of this method is that EIEIO is applicable only on positively charged precursor ions. We applied this technique on negatively charged lipid ions, but we had no evidence that negatively charged ions were dissociated by an electron beam with 0—20 eV range, although resonant electron capture was reported in negatively charged fatty acids This is an advantage of these techniques when observing rare double-bond locations.

However, EIEIO produced signals from both double and single bonds, so that deconvolution was required to separate multiple contributions from different double bond positions. In the porcine brain case, n-9 was dominant, and n-7 type was not recognized as a significant contribution over a few percent of the total isomer composition of those lipids. The spectrum accumulation time in this report was 1 min or longer because we tried to obtain spectra with peak intensities and signal-to-noise ratios that would provide good statistical reproducibility.

Such long accumulation times are amenable for an infusion-based sample delivery to an ion source coupled with DMS. Background chemical noise is removed by DMS, in addition to lipid-class-specific selection. However, for an LC-EIEIO approach, this accumulation time represents a challenge and would need to be shorter, typically less than 1 s.

Specifically, we have demonstrated a quantitative, comprehensive, structure-based lipidomics analysis method using EIEIO coupled with a preseparation of complex lipid extracts using DMS. This instrument opens a new window for real structural lipidomics 9. The authors thank Dr.

James Hager, Dr. Eva Duchoslav, and Dr. Bradley Schneider for the valuable discussion.

March, Raymond E. [WorldCat Identities]

Previous Section Next Section. Instrument A shotgun approach using infused ESI was used in this work. Comprehensive structure diagnostics of complex lipids EIEIO spectra of isolated precursor ions of the standards in protonated and sodiated forms were obtained supplemental Figs. View this table: In this window In a new window. TABLE 1. Lipid class diagnostics. TABLE 2.

Mass spectrometry part 2 : instrumentation (mass spectrometer)

Regioisomerism and chain diagnostics. Lipid class and brutto class identification. Regioisomer identification in GLs. Characterizing double-bond positions. Measurement of total brain extract Our methodology was applied to the total brain extract. TABLE 3. Observed complex lipids in the porcine brain top GPL profiles of brain lipids. A: PCs. B: PEs. Previous Section.

Ekroos , K.

Lipidomics: Technologies and Applications. Wiley , New York. Google Scholar. Suzuki , K. Reichel , C. Rhein , E. Gulbins , and J. Brain membrane lipids in major depression and anxiety disorders.

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